| Department | Department Chair | Program Type |
| Basic Islamic Sciences | Prof. Dr. Mehmet BİLEN | Master's (with Thesis/Non-Thesis, Evening Program), Integrated Ph.D. |
| Philosophy and Religious Sciences | Prof. Dr. Canan SEYFELİ | Master's (with Thesis), Ph.D. |
| Islamic History and Arts | Assoc. Prof. Dr. Sait MERMUTLU | Master's (with Thesis), Ph.D. |